General Information of Binding Target of SBP (BTS) (ID: ST00325)
BTS Name
Ricin
Synonyms
EC 3.2.2.22; rRNA N-glycosidase; Ricin B chain]
BTS Type
Protein
Family
Ribosome-inactivating protein family;
Type 2 RIP subfamily
Organism
Ricinus communis (Castor bean)
Function
Ricin is highly toxic to animal cells, and to a lesser extent to plant cells.; [Ricin A chain]: Acts as a glycosidase that removes a specific adenine residue from an exposed loop of the 28S rRNA (A4324 in mammals), leading to rRNA breakage. As this loop is involved in elongation factor binding, modified ribosomes are catalytically inactive and unable to support protein synthesis. Can inactivate a few thousand ribosomes per minute, faster than the cell can make new ones. Therefore a single molecule can kill an animal cell.; [Ricin B chain]: Binds to beta-D-galactopyranoside moieties on cell surface glycoproteins and glycolipids and facilitates the entry into the cell of the A chain. Also responsible for cell agglutination (Lectin activity).
UniProt ID
P02879
UniProt Entry
RICI_RICCO
PFam
PF00652 ; PF00161
Gene ID
8261245
Sequence
MKPGGNTIVIWMYAVATWLCFGSTSGWSFTLEDNNIFPKQYPIINFTTAGATVQSYTNFI
RAVRGRLTTGADVRHEIPVLPNRVGLPINQRFILVELSNHAELSVTLALDVTNAYVVGYR
AGNSAYFFHPDNQEDAEAITHLFTDVQNRYTFAFGGNYDRLEQLAGNLRENIELGNGPLE
EAISALYYYSTGGTQLPTLARSFIICIQMISEAARFQYIEGEMRTRIRYNRRSAPDPSVI
TLENSWGRLSTAIQESNQGAFASPIQLQRRNGSKFSVYDVSILIPIIALMVYRCAPPPSS
QFSLLIRPVVPNFNADVCMDPEPIVRIVGRNGLCVDVRDGRFHNGNAIQLWPCKSNTDAN
QLWTLKRDNTIRSNGKCLTTYGYSPGVYVMIYDCNTAATDATRWQIWDNGTIINPRSSLV
LAATSGNSGTTLTVQTNIYAVSQGWLPTNNTQPFVTTIVGLYGLCLQANSGQVWIEDCSS
EKAEQQWALYADGSIRPQQNRDNCLTSDSNIRETVVKILSCGPASSGQRWMFKNDGTILN
LYSGLVLDVRASDPSLKQIILYPLHGDPNQIWLPLF
Sequence Length
576
Synthetic Binding Protein (SBP) Targeting This BTS
SBP Name Highest Status Mechanism Affinity Application Details Ref
Nanobody anti-Ricin C8 Research Binder Kd: 0.2 nM Research tool
SBP Info
[1]
Nanobody anti-Ricin D1 Research Binder Kd: 0.5 nM Research tool
SBP Info
[1]
References
1 Contributions of the complementarity determining regions to the thermal stability of a single-domain antibody. PLoS One. 2013 Oct 15;8(10):e77678.