General Information of Binding Target of SBP (BTS) (ID: ST00280)
BTS Name
Protein P
Synonyms
EC 2.7.7.7; RNA-directed DNA polymerase; EC 2.7.7.49; Ribonuclease H; EC 3.1.26.4]
BTS Type
Protein
Family
Hepadnaviridae P protein family
Gene Name
P
Organism
Hepatitis B virus genotype D subtype ayw (isolate France/Tiollais/1979) (HBV-D)
Function
Multifunctional enzyme that converts the viral RNA genome into dsDNA in viral cytoplasmic capsids. This enzyme displays a DNA polymerase activity that can copy either DNA or RNA templates, and a ribonuclease H (RNase H) activity that cleaves the RNA strand of RNA-DNA heteroduplexes in a partially processive 3'- to 5'-endonucleasic mode. Neo-synthesized pregenomic RNA (pgRNA) are encapsidated together with the P protein, and reverse-transcribed inside the nucleocapsid. Initiation of reverse-transcription occurs first by binding the epsilon loop on the pgRNA genome, and is initiated by protein priming, thereby the 5'-end of (-)DNA is covalently linked to P protein. Partial (+)DNA is synthesized from the (-)DNA template and generates the relaxed circular DNA (RC-DNA) genome. After budding and infection, the RC-DNA migrates in the nucleus, and is converted into a plasmid-like covalently closed circular DNA (cccDNA). The activity of P protein does not seem to be necessary for cccDNA generation, and is presumably released from (+)DNA by host nuclear DNA repair machinery.
UniProt ID
P03156
UniProt Entry
DPOL_HBVD3
PFam
PF00336 ; PF00242 ; PF00078
Sequence
MPLSYQHFRRLLLLDDEAGPLEEELPRLADEGLNRRVAEDLNLGNLNVSIPWTHKVGNFT
GLYSSTVPVFNPHWKTPSFPNIHLHQDIIKKCEQFVGPLTVNEKRRLQLIMPARFYPKVT
KYLPLDKGIKPYYPEHLVNHYFQTRHYLHTLWKAGILYKRETTHSASFCGSPYSWEQDLQ
HGAESFHQQSSGILSRPPVGSSLQSKHRKSRLGLQSQQGHLARRQQGRSWSIRAGFHPTA
RRPFGVEPSGSGHTTNFASKSASCLHQSPVRKAAYPAVSTFEKHSSSGHAVEFHNLPPNS
ARSQSERPVFPCWWLQFRNSKPCSDYCLSLIVNLLEDWGPCAEHGEHHIRIPRTPSRVTG
GVFLVDKNPHNTAESRLVVDFSQFSRGNYRVSWPKFAVPNLQSLTNLLSSNLSWLSLDVS
AAFYHLPLHPAAMPHLLVGSSGLSRYVARLSSNSRILNNQHGTMPDLHDYCSRNLYVSLL
LLYQTFGRKLHLYSHPIILGFRKIPMGVGLSPFLLAQFTSAICSVVRRAFPHCLAFSYMD
DVVLGAKSVQHLESLFTAVTNFLLSLGIHLNPNKTKRWGYSLNFMGYVIGCYGSLPQEHI
IQKIKECFRKLPINRPIDWKVCQRIVGLLGFAAPFTQCGYPALMPLYACIQSKQAFTFSP
TYKAFLCKQYLNLYPVARQRPGLCQVFADATPTGWGLVMGHQRMRGTFSAPLPIHTAELL
AACFARSRSGANIIGTDNSVVLSRKYTSFPWLLGCAANWILRGTSFVYVPSALNPADDPS
RGRLGLSRPLLRLPFRPTTGRTSLYADSPSVPSHLPDRVHFASPLHVAWRPP
Sequence Length
832
Synthetic Binding Protein (SBP) Targeting This BTS
SBP Name Highest Status Mechanism Affinity Application Details Ref
scFv anti-DNA-polymerase D10 Research Binder N.A. Hepatitis B virus infection [ICD-11: XN0GA]
SBP Info
[1]
scFv anti-DNA-polymerase F7 Research Binder N.A. Hepatitis B virus infection [ICD-11: XN0GA]
SBP Info
[1]
scFv anti-DNA-polymerase G2 Research Binder Kd: 3.3 nM Hepatitis B virus infection [ICD-11: XN0GA]
SBP Info
[1]
scFv anti-DNA-polymerase G6 Research Binder N.A. Hepatitis B virus infection [ICD-11: XN0GA]
SBP Info
[1]
References
1 Selection of scFvs specific for HBV DNA polymerase using ribosome display. J Immunol Methods. 2004 Jan;284(1-2):147-57.